PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do005620.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 222aa    MW: 23031.2 Da    PI: 9.7787
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do005620.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.97.4e-0837100655
                 HHHHHHHHHHHHHHHHHHHCTSCCC................TTS-.STCHHHHHHHHHHHHHHH CS
         HLH   6 nerErrRRdriNsafeeLrellPkas.............kapskK.lsKaeiLekAveYIksLq 55 
                 + +E++RR +++    +L +l+P+a              ++p+k  ++  + L  A  YIk+L+
  Do005620.1  37 KDVEKNRRLHMKGLCLKLSSLIPPAArhasliseaaasaSNPNKDtVTQLDQLDSAAAYIKQLK 100
                 689*********************666************7777777****************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512577132No hitNo description
PROSITE profilePS508888.6773199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-1035110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.14E-836110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.9E-53799IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MKSRRQSSGG SSAGATAAGE GNTHSSGGGG GCKLERKDVE KNRRLHMKGL CLKLSSLIPP  60
AARHASLISE AAASASNPNK DTVTQLDQLD SAAAYIKQLK ERIEALKRRK EGGLGGSGCK  120
GGTAAAGISA GGGAAAVRMP VIEVRYQDGT LDVVLISEAG RPFKLHEVIT ALEQEGAEVV  180
SASFSVVGDK IFYTIHSQAL SPRIGLDAAR VSERLQDLLL LV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0388181e-154BT038818.1 Zea mays full-length cDNA clone ZM_BFb0332C18 mRNA, complete cds.
GenBankKJ7268681e-154KJ726868.1 Zea mays clone pUT3409 bHLH transcription factor (bHLH76) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967963.11e-125PREDICTED: uncharacterized protein LOC101784195
TrEMBLK3XLS41e-125K3XLS4_SETIT; Uncharacterized protein
STRINGSi002847m1e-125(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82936133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10586.11e-17bHLH family protein